PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 3607953 Dshi_1361 D-lactate dehydrogenase (cytochrome) (RefSeq) (468 amino acids)

SeqID: 3607953 Dshi_1361 D-lactate dehydrogenase (cytochrome) (RefSeq)
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600548: glycolate oxidase subunit GlcD[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>3607953 Dshi_1361 D-lactate dehydrogenase (cytochrome) (RefSeq)
MTDQTPLRRNAAGIATALDVLRQKFGARLQTGAALREQHGHTTTWLPNQPPDAVFLPRET
AEVQDVLRICTAYGMPLVPFGTGTSLEGHVNAPLGGLSLDFAEMNQVLAIHPEDMDCVVQ
PGITRKALNEELRATGLFFPVDPGADASLGGMAATRASGTNAVRYGTMRDVVLALEAVTA
DGRVIRTAKRARKTSAGYDLTRLLVGSEGTLGVITELTLKLSGIPEAVAGATCSFASVEA
ACAAVIATIQYGVPVARIEFLDALSVRSINAYSKLSLPEAPLLLLEFHGSEAGVAEQSET
FGEIAADHGALAFDWTSDAEARAKMWQARHDAYWAMRALRPGFDAFVTDVCVPVSRLAEA
VSAAAERAEADGIIAPTLGHVGDGNFHVALLIDPDDPGGRARAESYIGWLNDLAISLDGT
CTGEHGIGQGKVKYLARELGANTVDVMAALKSAMDPDNILNPGKLFQG

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory