PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 3607958 Dshi_1366 aminotransferase class-III (RefSeq) (441 amino acids)

SeqID: 3607958 Dshi_1366 aminotransferase class-III (RefSeq)
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 39932236: Taurine--pyruvate aminotransferase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>3607958 Dshi_1366 aminotransferase class-III (RefSeq)
MALDAKSRPNDLSAFWMPFTANRQFKSNPRMFVAADGMYYTTAEGRQVLDGTAGLWCCNA
GHKRPRIVEAIQAQAAELDYAPAFQMGHPRAFELANRLVEIAPDGMDHVFYTNSGSEAVE
SALKIALAYHRARGEAGRTRLIGRERGYHGVNFGGISVGGIVNNRKHFGTLLTGVDHLPH
THIPENQWSRGMPELGAHLADDLERIIALHGAETIAAVIVEPMAGSTGVLLPPKGYLQRL
RKITQDHGIVLIFDEVITGFGRVGAAFGAQRFGVTPDMITCAKGLTNGVIPMGAVLCGSH
IHDAFMQGPENLIELFHGYTYSGNPIASAAGLATLETYREDDLFARALDLEPYWQEALHS
LKGARHVIDIRNLGLIGAIELEPISGHPTKRAFQAFLDAYDKGVLIRTTGDIIALSPPLI
IETAQIDRIVETLGEVLAALD

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory