PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 3608080 FitnessBrowser__Dino:3608080 (804 amino acids)

SeqID: 3608080 FitnessBrowser__Dino:3608080
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 7388257: Sarcosine oxidase subunit alpha]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>3608080 FitnessBrowser__Dino:3608080
MKSHTQVCVIGGGVVGCSVLYHLTKLGWSDVMLLERSELTSGSTWHAAGGFHTLNGDTNM
AALQGYTIGLYKELEALTGLSCGLHHVGGITLADTPERFDMLKAERAKHRYMGLETEILG
PAEIKAMADLVNTDGILGGLYDPLDGHLDPSGTTHAYAKAAKLGGAQIHTHTMVTATTPN
PDGTWTVETDKGTVIAEHLVNAGGLWAREVAAMAGVYLPLLPMAHQYIVTDDIPEIYTRA
TEFPHVIDPGGESYLRQEGRGLCIGFYEKPCEAWSVDGTPWDFGHELLNDQFEKIEDSIA
FAYRRFPVLETAGVKSVIHGPFTFAPDGNPLVGPVPGLRNYWSACAVMAGFSQGGGVGLA
LAQWMIEGETERDPRAMDVARFGRWTTPGYTVPKVIENYQNRFSVSYPNEELPAARPFRT
TAMYDIWDGMGAVFGQTYGLEVVNYFAPEGAPRFETPSFRRSNAWGAVKAEVMAVRTGVG
INELQNFGKFRVTGPGARAWLDRIMAGRIPAPRRLSLSPMLAPSGRLIGDFTISCLSETE
FQLTASYGAQDYHLRWFQTHLDDGVTVENISDARTGFQIAGPRAREVLAACTRADVSAEA
FRFFDVAPMTIGMAHCLVQRVSYTGDLGYEIYCSPTEQRHLFHTLWEAGQPHGIRPFGMR
AMMSLRLDKFFGAWSREYSPDYTAAETGLDRFIHFGKNTAFIGRNAAEAERATPPARQLC
AFEVAATDADVVAYEPISLDGEVVGFCTSGGYAHFTGKSIALGFVPREMAQDGLEASIEI
LGDHCPATLITTPLFDPDGARMRG