PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 3608081 FitnessBrowser__Dino:3608081 (621 amino acids)

SeqID: 3608081 FitnessBrowser__Dino:3608081
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [12 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 1705453: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>3608081 FitnessBrowser__Dino:3608081
MPVKPPVTDLPIRTADSGFYKGFTKDVAITGKLLVGGLILWAIAFPDQAASVLGALNSII
LATFNIWYVYTMAFFVILCFALALWPTAGKLRLGHDDDRPEFSNFSWFSMMFGAGIGIGM
LTFATAEPMYHFGANPATIMGDTEGSTAGNVRDAYIWSFTHWGLAAWASYAIVGLALGYF
CYRRGLPLTIRSALTPIFGNKLSGPVGHVVDIVAVVATVLGVSQTLGFGVEQFIAGLSRI
GVGDWLYTATADGGQTSSTMGIIVALCVIMGLSTLSALSGVGKGIKWLSNLNMGLSFFVL
IFFLIFGSTFFGLQTLFVGMFDYLVSIPGNIFTVWVGAPAEAIIASVPASVQALPAEDLA
AMVESATSPWGTLASFTEGLPASAAALPAADIAAVYAAATENRLSGWQGAWTIFYWAWWI
AFAPFVGVFLARISKGRTVREYVLGAMIIPAIMCFVWFALVGGTAIDLELRGVADGAIQG
AGQADQLFAMLAVMLSEGLAYAMSVLIVILLLTYLVTSADSAVLIINTINAAGDEGPKAR
PHILFWGAALALVVGGLIIAGGLGAIQTAMVIGALPFSVVMVLMGLSLIKAVYRDGLRLK
HGLPATHVEPADTDAAPTPAE