PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 3608193 Dshi_1598 binding-protein-dependent transport systems inner membrane component (RefSeq) (268 amino acids)

SeqID: 3608193 Dshi_1598 binding-protein-dependent transport systems inner membrane component (RefSeq)
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [8 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 130690: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>3608193 Dshi_1598 binding-protein-dependent transport systems inner membrane component (RefSeq)
MSRRVLWTYAVVYLVFLYLPVALLPIFAFNDSTIIAFPLSGFTISWFVELTQIPALHDAV
RNSLIIALSTAVFSTALGVFASRAATRFEFPGKAGIMGFIMIPLVLPEIIVAVSLLVVLL
QMGLNLSLWAVILGHTLICTPFCIAILSSSFSGLDRSLEEAAIDLGETRLSAFRLIILPL
VAPGIVASLLISFTISLDEFIIAFFLTGTDPTLPVYIWSQLRFPQKLPVIMALGTILILL
SLVLIITAEAFRRRGLRKSGQTDTGGFL