PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 3608399 FitnessBrowser__Dino:3608399 (339 amino acids)

SeqID: 3608399 FitnessBrowser__Dino:3608399
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595847: anthranilate phosphoribosyltransferase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>3608399 FitnessBrowser__Dino:3608399
MSDALKPLIGAAADRPLTRAEAEAAFEILFEGEATPSQMGGLLMALRTRGETVAEYAAAA
AVMRAKCNAVRAPEGAMDIVGTGGDGKGTLNISTATAFVVAGAGVPVAKHGNRNLSSKSG
AADALAQMGIEVMVGPAVVERALSEIGIAFMMAPMHHPAIRHVMPTRAELGTRTMFNILG
PLTNPAGVKRQLTGAFSRDLIRPMAETLAALGSDVAWLVHGSDGTDELTITGVSWVAGLS
DGAVTEFEVHPEEAGLPVHPFEAILGGTPEENGAAFRALLAGEASAYRDAVLLNAAAALK
VAGRVTALPDGVMLAAEAIDSGAALAKVQGLAQITSEAT

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory