PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 3608587 Dshi_1981 ABC transporter related (RefSeq) (257 amino acids)

SeqID: 3608587 Dshi_1981 ABC transporter related (RefSeq)
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 121397: Glutamine transport ATP-binding protein glnQ]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.82
    Cytoplasmic            0.15
    OuterMembrane          0.01
    Periplasmic            0.01
    Extracellular          0.01
  Final Prediction:
    CytoplasmicMembrane    9.82

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>3608587 Dshi_1981 ABC transporter related (RefSeq)
MAEPILATHGLTHDFGPFRALHGVSLEVAPGTMTGLIGPNGAGKSTLFNVLTGALRPTSG
TVTLQGTDITGQPPDALFRAGLARSFQIPRPFARMTVLENVMLAPKAQIGERVWGAFLNP
RAMAAQENAIRQKAMEVLEFVTLAKLADQAAGEISGGQMKLLELARVLMGDPTLILLDEP
AAGVNPALTEVLIDKIETLNRTGTTFVIIEHDMDFVMQHCTPVIALGQGRVIFEGTPEQA
LADPVLLDAYLGAQAHG

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory