PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 3608675 Dshi_2068 methylthioadenosine phosphorylase (RefSeq) (289 amino acids)

SeqID: 3608675 Dshi_2068 methylthioadenosine phosphorylase (RefSeq)
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598200: 5-methylthioadenosine phosphorylase MtnP[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>3608675 Dshi_2068 methylthioadenosine phosphorylase (RefSeq)
MQTYIGIIGGSGLYEIDGLEGATWTTVDSPWGTPSDAILTGTLDGVKMAFLPRHGRGHVH
SPSTVPYRANVDALKRLGVTDVISVSACGSFREEMAPGDFVIVDQFIDRTFAREKSFFGT
GCVAHVSVAHPTCPRLGAACLTAGRDAGITVHETGTYLAMEGPQFSTLAESKMYRESWGC
DVIGMTNMPEAKLAREAELCYASVAMITDYDSWHPDHGEVDVNEIIKTLMGNSEKAKGLV
ARLPKLLGADRAPCPHGCDRALDYAILTAPEKRDPALVAKLDAVAGRVL

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory