PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 3608721 FitnessBrowser__Dino:3608721 (424 amino acids)

SeqID: 3608721 FitnessBrowser__Dino:3608721
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 1707990: Serine hydroxymethyltransferase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>3608721 FitnessBrowser__Dino:3608721
MLKTLNTAGISDTAIAEAIGHELDRQQTQIELIASENIVSVDVLRAQGSVLTNKYAEGYP
GRRYYGGCEHVDTVEQIAIDRVCELFGSRFANVQAHSGAQANQAVFLALLKPGDRIMGLD
LAHGGHLTHGSPVTMSGKWFDVVSYEVSRDDHLIDMDNVRKVALDTKPKLIVAGASAYPR
HMDFAAFRAIADEVGAWLMVDMAHYAGLIAAGEYPDPVPHAHVVTSTTHKTLRGPRGGII
LTNDEALAKKFNSAVFPGNQGGPLMHVIAAKAVAFGEALEPSFKQYAKDVIANARALSEV
LVAGGLGVVSGGTDCHMVLVDLRPKGVTGKAAENALERAGLTCNKNAIPFDPEKPFVTSG
VRLGTSAGTTRGFGEAEFRKVGALVLRVIDALAENAEGDAAVEAAVLEEVRALCAAHPIY
ADDV

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory