PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 3608768 Dshi_2160 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase (RefSeq) (420 amino acids)

SeqID: 3608768 Dshi_2160 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase (RefSeq)
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 129041: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>3608768 Dshi_2160 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase (RefSeq)
MATEILMPALSPTMEEGTLAKWMVKEGDSVSSGDLLAEIETDKATMEFEAVDDGIIGKIL
VAAGTDDVKVNTLIAILLEEGEELGAEKPAEQPPEPASVQQEAAPQETAKAPPPKTGDRV
FASPLARRLAKQKGLDLSEIRGSGPHGRIVKADVDAAEQPAAVPEQAAAPQTRQPEGPKS
ASSVASIFADRPFTEVSLDGMRKTIAARLTEAKQTIPHFYLRRAANLDALLTFRTELNAQ
LAPSGKKLSVNDFVIKACARALQSVPHANAVWAEDRILQMQRSDVAVAVAIEGGLFTPVI
KDADQKSISALSEEMKDLAARARERKLAPSEYVGGTFAISNLGMFGIENFDAVINPPHGA
ILAVGAGVKKPTVDADGAVTVATQMSMTLSVDHRVIDGSVGAALLAEIVSGLENPLLLLA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory