PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 3608903 Dshi_2294 Pyrrolo-quinoline quinone (RefSeq) (769 amino acids)

SeqID: 3608903 Dshi_2294 Pyrrolo-quinoline quinone (RefSeq)
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [5 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 118555: Alcohol dehydrogenase [acceptor] precursor]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.86
    Periplasmic            0.14
    Cytoplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    9.86

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>3608903 Dshi_2294 Pyrrolo-quinoline quinone (RefSeq)
MTKLFGAILVLVGALMFVPGIWLIALGGSWYYSLAGAGLAAAGFYYWKKQLLGAWIFGAV
FAGTALWAVWEVGFELWPLVPRLVAPMVLAILAVLLVPSLNEGRGRTASLAAAGVLALGI
AGFFWGMATPQNVIANTDPVPTRAIAAESPNWTHYGRTPTGTRFAPFDQITPENVGELEV
AWTFNHGDAPSGTGQDQNTPLYVDGLVYHCSPNNIVSAIDAVTGAQVWQYDPEASSPLWQ
RCRGVTYYEPTPREGAPADGTCAARIVLSSVDARLIQLDARTGALCTTFGDGGAVDLTRN
MGEVRPGFYFPTSAPTVMGDRIILGGWVWDGMAVDEPSGVVRAFDGRTGEIAWAWDIGNP
AIDTVPPEGETYTRGTPNVWSTPAFDAALGLVYLPTGNAQPDFYGSSRIEAANDWNSSIV
ALDVETGKVVWSFQTTYRDIWDYDVPAQPMLYDITTETGEVVPALIQVTKRSQTFVLDRR
DGTPIAEVRDLPVPTTGGVEPDYLSPVQPYSVDMPVIGAEPLTEARMWGATPLDHLYCRI
RFRQAYYVGDFTPMSEQGTLIWPGYFGGMNWGTGTIDEARGLLIVNDTRVAHLLQLIPRQ
EADALGVEVVGPHDGLAPQDGAPFGAMRSNFFSFVGVPCQEPPYGTMTAIDLADRSILWQ
RPVGTIEETGPFGIRTGWRMPVGLPLVGGPISTASGLTFYSGTQDYYLRAFSSETGEELW
RGALPLGSQSTPMSYIGPDGRQYVVVTVGGLNDIMGRGDIVMAFALPEE

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory