PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 3608967 Dshi_2357 acyl-CoA dehydrogenase domain protein (RefSeq) (406 amino acids)

SeqID: 3608967 Dshi_2357 acyl-CoA dehydrogenase domain protein (RefSeq)
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 45593149: Crotonobetainyl-CoA dehydrogenase (Crotonobetainyl-CoA reductase)]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>3608967 Dshi_2357 acyl-CoA dehydrogenase domain protein (RefSeq)
MNIETPISNKDAPDLAGFDWPDPLRLEDQLSEEERMLRDGGAAFAADKLAPRVIDAYREA
TVAPEIFSEMGAAGLLGITVPEAYGGLGGSYVAYGLVAREIERIDSGYRSMMSVQSSLVM
YPIHAYGTEEQRQKYLPGLAAGTLIGCFGLTEPDAGSDPAGMKTRAEKTPTGYRLTGSKM
WISNSPIADVFVVWAKSEAHGGKIRGFVLDKGTPGLSAPKVGGKLSLRASVTGEIVMDGV
EVGEDALLPGVEGLKGPFGCLNRARYGIGWGVMGASEFCWHAARQYGLDRHQFKRPLAQT
QLFQKKLADMQTEIALGLQAALRVGRLMDEGRAAPEMISLLKRNNCGKALEIARAARDMH
GGNGISEEFQVMRHMVNLETVNTYEGTHDVHALILGRAQTGLQAFF

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory