PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 3609040 FitnessBrowser__Dino:3609040 (461 amino acids)

SeqID: 3609040 FitnessBrowser__Dino:3609040
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    2.00
    Periplasmic            2.00
    Cytoplasmic            2.00
    Extracellular          2.00
    OuterMembrane          2.00
  Final Prediction:
    Unknown

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>3609040 FitnessBrowser__Dino:3609040
MTRHVAVIDIGKTNAKLALVDRQSLTEISVITRPNTVLPGPPWPHFDVDGHWAFLLDGLR
DFQARHGIDAISITTHGACAALLQKDGALAAPILDYEHPGPDDTALAYDALRPPFSETGS
PRLAGGLNIGAQLFWQFHTDPALRDRTRQIVTYPQFWGAKLTGVTATDVTSLGCHTDLWN
PHAGAVSSLVDRLGLTGKLAPVRKPHDILGPVLPAVAAQTGLAPGTPVHCGIHDSNASLL
PYVLTQTSPFSVISTGTWVVAMSVGGRPVVLDPDLDTLINVTALGQPAPSARFMGGREHD
LATEGTGPPPSAQDLDHILSRQILLLPAVVPDTGPFKGQASRWEGDAPAPGTGARGAAVA
LYLALVTAECLSNIGHAGKIIVEGPFAGNRLYLEMLSVAMEADVVRASGTTGTSAGAALL
AGGDAGAPPRPDSLVALPAASKTRLRHYAAHWRQRARRRTP

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory