PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 3609216 FitnessBrowser__Dino:3609216 (401 amino acids)

SeqID: 3609216 FitnessBrowser__Dino:3609216
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 45593149: Crotonobetainyl-CoA dehydrogenase (Crotonobetainyl-CoA reductase)]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>3609216 FitnessBrowser__Dino:3609216
MSEKLDAILAAAHTHATEVVAPNVDAWNAAKAWPRDASDKAGAAGLTGLYAPEDWGGQGL
PLSEGIQVYEQLGLGDGAYAFALSMHNICTFAGCGYGTDAFKKKWARDLTAGRKLANFAL
TEPQSGSDPMKMYTRAMINGDGTWTISGSKAWVSLATEADIYFTVVKTSDAPGHKDMAMI
AIPADAPGISFGPLYETPSYNFLPMSEMYLDNVVVSEENIILPIGQGLQGSLMAIDIARV
SIASGCCGLMQAALDTALSYSKSRKMFGGKNLDLDGIQWMLGEVATDLEASKLLYRRAAE
ALGTPDGPLMAAHAKRFVPDAAVKAANTCTQVLGGMGLLQPYGLDGLSRLAQMLRIVDGT
TEISRVVIGRALQKRAAGLPDLPVPKGFGERDEEASSIAAQ

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory