PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 3609311 Dshi_2696 inner-membrane translocator (RefSeq) (554 amino acids)

SeqID: 3609311 Dshi_2696 inner-membrane translocator (RefSeq)
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [9 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 17380390: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>3609311 Dshi_2696 inner-membrane translocator (RefSeq)
MRAAPPRNPTCAPERDMTILRLCLAVLLTCLATLTAPGPAAAQSFEDLVADLPEGKFAER
SAVVARLAALGDPRAVPVLEVLRDGNLHVLKSNGAVVAIREIAGDDVAYDAITGAEYGIV
PRRGATKIRVNNGLRRDIRAAIGTLTLRAPDPALRLAAAEAAFSAPDPDQLDLLRAAREA
ENTGTVAEALDYAIAATLIAADAPEAEQVAAIEVLREMGNQDALSILTPLLQATNPVLAQ
AAADALAAIEANQRFWNMAQNVWFGLSLGSVLLLAAIGLAITFGVMGVINMAHGELVMIG
AYTTFFVQEIIRTSFPHLFDWSLLIAAPLAFAVAGAVGVAIERGCVRFLYGRPLETLLAT
WGISLILQQTVRSIFGPNNREVGNPSWMSGAFEVGQMTITYNRLWILLFALAVFAVLLFV
LKKTAIGLQMRAVTQNRAMAANMGIRTGWVDAMTFGLGAGIAGLAGVALSQIDNVSPNLG
QSYIVDSFMVVVFGGAGNIWGTLAAAFSLGIANKFLEPYAGAVLAKILVLVFIILFIQKR
PRGLFAVKGRAVEN