PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 3609583 FitnessBrowser__Dino:3609583 (831 amino acids)

SeqID: 3609583 FitnessBrowser__Dino:3609583
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 2498933: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>3609583 FitnessBrowser__Dino:3609583
MKTQVKALVVGGGAVGTGIAYHLGKAGWDVLLLERDELTSGSTWHAAGLLPLFNMSYATS
HIHDYSVKFYKGLEAETGLNPGFAVVGNLRMAQTQARMDEYMLYAATAETVGIPHEWLTP
AQIRDRYPLVRTEDLKGAILHPTDGYINPADVTQAMAKGARQHGVAIERKWQVDAYAWQG
DHWAVTVTKMADRGGNLVPTDEQQVIRAEHVVTATGNHAQRTAQLLGIKIPAIPVEHQYI
VTEPDPALVQWRKDNPEHPVLRDADAKWYVREERGGWILGPYEQGAPARFKYAVPESFRA
DLFPLDLERIEEEYMSMIHRIPTSETVGLKDDYNGPICYTPDGNPLVGPAPGLRNMWLAE
GFSFGITAAGGTGYYLAQMMTEGEAEIDMASLDPRRYGSWMTTEYAATKNEECYAHVFIL
HHPDEERAACRPLRTTPAYDRQKALGAQFGQVNGWERPNYYGPLDAPDNFDHDARSFRRG
GWWDYARAEAEAVRSTAGLIDATAFAKHRVSGPGATAFLDWFTTNTLPRVGRINLTYALT
GAGTTHTEYTILRTGEDDYTLISAGAWHAYDQDFLTKAIEDTEPRFGRITLQDTTTQTGV
FALAGPKARDILKALIRDPDPETALSNKRFPWLGTREIELGMCPLRAVRVAYTGALGWEL
HHPIEMQTYLWDQLMAVGAAHGLKPVGARAQNWLRQEKSYRAFGTELGRDATPLEAGLDR
FVDLSKDFHGKAAMVETGIRSRCVTLLIDGPDDADPWGREALYAGDTRVGRLTSGGYSVA
FGKSIAMGYVTPDHAAPGTKLKVRMFNALWDAEVTEDSPFDPQNATIRADG