PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 3609667 Dshi_3050 Citrate (pro-3S)-lyase (RefSeq) (318 amino acids)

SeqID: 3609667 Dshi_3050 Citrate (pro-3S)-lyase (RefSeq)
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 3913247: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>3609667 Dshi_3050 Citrate (pro-3S)-lyase (RefSeq)
MSFRLQPPAPARPNRCQLFGPGSRPAIFEKMAASAADVINLDLEDSVAPDDKAQARKNVI
QAIGDVDWGKKTLSVRINSLDTPFWYRDVVDLMEQAGERLDQIMIPKVGCAEDIYAVDAL
VTAAEAAAGRTRKISFEVIIESAAGIAHVEDIAAASPRLQAMSLGAADFAASMGMQTTGI
GGTQENYYMLHEGAKHWSDPWHWAQAAIVAACRTHGVLPVDGPFGDFSDDEGFRAQARRS
ATLGMVGKWAIHPKQVAIANEVFTPSAEAVAEAREILAAMEQAKANGEGATVYKGRLVDI
ASIKQAEVIVAQSELIGG

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory