PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 3609744 FitnessBrowser__Dino:3609744 (579 amino acids)

SeqID: 3609744 FitnessBrowser__Dino:3609744
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    2.50
    OuterMembrane          2.50
    Periplasmic            2.50
    Extracellular          2.50
    Cytoplasmic            0.00
  Final Prediction:
    Unknown

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>3609744 FitnessBrowser__Dino:3609744
MRKYLLSAVAAGAVIAGQSGAMADEAAAQRWIDEEFQPSTLSKEEQLEEMRWFIQAAEPF
AGMEINVLSEGIPTHSYESEVLTRAFEEITGIKVNHQILGEGEVVQAVQTQMQTGRNLYD
GYVNDSDLIGTHSRLQLAYNLTEQMAGDWAATTSPTLDLEDFMGIQFTTGPDGNLYQLPD
QQFANLYWFRKDWFDDEANKAAFKEKYGYELGVPVNWSAYEDIAEFFTNDVQEIDGVRIY
GHMDYGKRAPDLGWRMTDAWLSMAGAGDVGEPNGVPVDEWGIRMEAGTCNPVGASVTRGG
AANGPAAVYAIRKWDEWLRNYAPPGAASYDFYQSLPALSQGNVAQQIFWYTAFTADMVKP
KSEGNNTVDDDGNPLWRMAPSPHGPYWTEGQKVGYQDVGSWTFLKSTPSDRAQAAWLYAQ
FVTSKTVDVKKSHVGLTFIRDSSVRHESFTERAPKLGGLVEFYRSPDRTAWSPTGINVPD
YPKLAQIWWQQIGDVNSGAFTPQEAMDRLAEEMDITMARMQQADEAAGVYGGCGPRLNEE
RDAEYWFSQPGSPKPKLANEKPQGETVNYDELVARWQAQ