PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 3609746 Dshi_3129 ABC transporter related (RefSeq) (357 amino acids)

SeqID: 3609746 Dshi_3129 ABC transporter related (RefSeq)
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 731052: sn-glycerol-3-phosphate transport ATP-binding protein ugpC]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>3609746 Dshi_3129 ABC transporter related (RefSeq)
MAQIRLSKLRHSYVPAPKGPEDYALKEIDVTWRDGGAYALLGPSGCGKSTLLNIISGLLT
PSEGQVLFDDRDVTGLPPDQRNIAQVFQFPVIYDTMTVRQNLAFPLKNRGVDAATIEARV
GEIAEMLEVTDMLDTKASNLGPDNKQKISMGRGLVRDDVNVVMFDEPLTVIDPHLKWKLR
SKLKELHQKVRATMIYVTHDQTEALTFADEVVVMQDGEVVQIGTPVELFERPQHTFVGHF
IGSPGMNVLPCELRGDHAVFEGHEVALEGPATGTGGTLKLGIRPEYVRLGETGLPAQLVK
VSDVGRHFVLDAMVGNTRVKAVSETPPPPTGSPVNLSFRPEHTRVYRDGWIATEARP