PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 3610091 FitnessBrowser__Dino:3610091 (406 amino acids)

SeqID: 3610091 FitnessBrowser__Dino:3610091
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598721: argininosuccinate synthase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>3610091 FitnessBrowser__Dino:3610091
MSAPKKVVLAYSGGLDTSIILKWLQTEYDCEVVTFTADLGQGEELEPARAKAEMMGASAI
YIEDLREEFVRDFVFPMFRANAVYEGLYLLGTSIARPLISKRLVEIAEAEGADAVAHGAT
GKGNDQVRFELAAYALNPDIKVIAPWREWDLSSRTKLIDFAEKHQIPIAKDKRGEAPFSV
DANLLHTSSEGKVLEDPAEDAPDYVYQRTVNPEDAPNTPEYIEVGFERGDAVSINGEAMS
PATVLTKLNELGGAHGIGRLDLVEGRFVGMKSRGIYETPGGTILLEAHRGIEQITLDRGA
AHLKDELMPRYAELIYNGFWFSPEREMLQAAIDASQAHVTGTVRLKLYKGSVRTVGRWSD
HSLYSEAHVTFEDDAGAYDQKDAAGFIQLNALRLKLLAARNKRLGK