PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 3610092 Dshi_3473 threonine dehydratase (RefSeq) (413 amino acids)

SeqID: 3610092 Dshi_3473 threonine dehydratase (RefSeq)
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595528: threonine dehydratase, biosynthetic[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>3610092 Dshi_3473 threonine dehydratase (RefSeq)
MTEFADNAHRAASAMRPLFPATPLQMNIHLSERYGAEIWLKREDLSPVRSYKIRGAFNAI
SKRVAEGQTQFACASAGNHAQGVAYACQHFGVHGVIFMPVTTPRQKIDKTRIFGGTAIDI
ELVGDYFDDTLAAAQRYCTEASATFLSPFDDADVIEGQSTVAVELLEQLEGPPDMVILPV
GGGGLSSGMKRYFEVCGVQVDLRLVEPCGARSLAKALETGAPQTLSKVDNFVDGAAVARI
GARPFEILRDVPPDHVLGAPEDRICHTMLEMLNVEGIVLEPAGALAVDVLDTLRDSITGK
RVVCVTSGGNFDFERLPEVKERSLRYAGLKKYFILRLPQRPGALKEFLGFLGPDDDIARF
EYLKKSARNFGSVLIGIETKDAGAFEQLFARLDAAGFPFRDITEDALLAEFLI