PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 3610446 FitnessBrowser__Dino:3610446 (678 amino acids)

SeqID: 3610446 FitnessBrowser__Dino:3610446
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 20141685: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>3610446 FitnessBrowser__Dino:3610446
MSLLDVQSFAAGHWIAPDADARMIAHAVTGAPLARAGNGALDVQAMLDYARDTGGPALRA
LTFHDRARMLKALALHLGAHKQALYDLSFATGATQADHLIDIDGGIGTVFVFASKGRREM
PDAHVYLDGEVEQLSRTGTFLGQHIATPLQGVAVHINAFNFPVWGMLEKLAPTLLAGMPA
IVKPATASCYVTEKAVRIILDSGILPAGALQLVTGGLGDMLDRLTCQDVVSFTGSADTAL
RLRAAPHLLRNAVRFVAEQDSLNASILGPDAVPGTPEFDLFIREVAREMTAKAGQKCTAI
RRILAPQAQVDGVIAALGARLAKTVIGDPRDTATTMGALVSNGQKRDVLAKARVIATEAE
RVFGDPEAFTVHGADARTGAFLPPMLLHCADPDAAQRLHDTEAFGPVSTVMGYRDLDHAV
ALVNRGAGSLVASLITHDPEVARQVALGAGAFHGRLYINDRDSMGEATGHGAPLPHMIHG
GPGRAGGGEELGGVRGVMHYMQRTAIQGSPDMLTAIGGKWVPGATETPAPAHPFTRGFDA
LRIGETLHTPARQVTLADIEHFAAFTGDTFYAHMDDAAAARNPFFPGRVAHGYLLLSFAA
GLFVDPDEGPVLANTGLDSLRFLKPVAPGDSLKARLTVKHKTPRNDAYGEVRWHVSLTNQ
EDDLVAEYELLTMIAYAA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory