PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 3610805 FitnessBrowser__Dino:3610805 (331 amino acids)

SeqID: 3610805 FitnessBrowser__Dino:3610805
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 586718: 2,3-diketo-L-gulonate-binding periplasmic protein yiaO precursor]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    CytoplasmicMembrane    0.12
    Extracellular          0.11
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>3610805 FitnessBrowser__Dino:3610805
MTHLTRRTALGLATAALLVAGTASAQDTLELRMSVESTPGASTQQILAAFRDALQAEMGD
AVAIEYFDSGTLGDEIVHMQQVRTGQLDVIPIGSDAVQLDPKFAVFDIPFLFNSRDQVAA
VLDGPIGAELDQSFQENAGLKVLGFGEIGFRHITNNVRPVVTPADLEGLKLRTPGSSTRI
MSFEMLGASPIKMNIGEVYLALQQGVIDGQENPFGNIAKWSWDEVQKYISLSRHVYTPIT
LVMNLRTYEGLTDEQRDAVHAAARVAVDSSRAYGAENDASLEAVIRERSPDVELNEIDAA
SFRDVAKAIGAEIGKTAGEAFTARFVEAASQ

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory