PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 4911804_24_214 (191 amino acids)

SeqID: 4911804_24_214 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>4911804_24_214
GFAPLFDGKTLDGWTFIVKPDKDGKKADPKGTWSVVDGAVRCTGKPNGCMVTKGEYGDYV
LKLKWRFLEGKGGNTGVLLHVQDEKYWPTSIEAQLLTGHAGDLFLNTPPAVKLNVDKQRH
DPKIERRFLRLETPADVEKKLGEWNECELTCSGGDITFTVNGVKVNEGKNGNLKKGRIAL
QSEGVEVHFRT