PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 5207484 Shew_0018 3-ketoacyl-CoA thiolase (RefSeq) (387 amino acids)

SeqID: 5207484 Shew_0018 3-ketoacyl-CoA thiolase (RefSeq)
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 135750: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>5207484 Shew_0018 3-ketoacyl-CoA thiolase (RefSeq)
MKQAVIVDCIRTPMGRSKAGVFRNMRAESLSAELMKALLVRNPQLDPNTIEDVIWGCVQQ
TLEQGFNIARNAALLAGIPKQAGAVTVNRLCGSSMEAIHQAARAIMTGMGDTFIVGGVEH
MGHVPMNHGVDFHPGLATNVAKASGMMGLTAEMLGKMHGITRQQQDEFAVRSHQRAHAAT
VEGRFANEIHAIEGHDANGALIKVMHDEVIRPETSLESLATLRPVFDPANGTVTAGTSSA
LSDGASAMLVMEEEKAKALGLPIRARIRSMAVAGCDAAIMGYGPVPATQKALQRAGLTMN
DIDLIELNEAFAAQSLPCVKDLGLMDLVDEKVNLNGGAIALGHPLGCSGARISTTLINLM
ESKDATLGLATMCIGLGQGIATVFERA