PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 5207560 Shew_0094 ABC transporter-related protein (RefSeq) (369 amino acids)

SeqID: 5207560 Shew_0094 ABC transporter-related protein (RefSeq)
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 118129: Sulfate/thiosulfate import ATP-binding protein cysA]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.99
    Cytoplasmic            0.01
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    9.99

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>5207560 Shew_0094 ABC transporter-related protein (RefSeq)
MSQDVADLSCKIFQQEGIALDAEFVCKAGEVLAVVGPSGGGKSTLMRMIAGLTKPESGEI
RYGDSVWFSSESGRYLTPQQRHLGYVPQHFGLFPNMTALANVVAALDHIPKAERVARAKD
WLERVNLHGLPDRLPANLSGGQRQRVALARALAREPRVLLLDEPFSAVDRETRERLYLEL
ARLKEQLAIPVIMVTHDLNEALLLADRMILISQGTLLQQGSPREVLSRPRNEAVAKQMGL
RNLFDAHVVAQEAERQITWLRFGEHLIAGNYCEQLAIGAKVRWVIPNQGVRFNSITKGRL
CRSFNKLSITIESCLSMGETMRILASIKGVKHHLNAEVPLHFAQKMGLAPGVETEVALKS
ELIHILEND