PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 5207723 FitnessBrowser__PV4:5207723 (231 amino acids)

SeqID: 5207723 FitnessBrowser__PV4:5207723
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 77416667: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            4.99
    CytoplasmicMembrane    4.90
    Extracellular          0.10
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>5207723 FitnessBrowser__PV4:5207723
MLDRRSILKMAAGGALLSLVPASTLQAKTLGKRYAMVFDVRRCTGCLSCTVSCSVENQTD
AGRCRTRVNQASLSLGERIATLAVPNQCNQCDNPVCTQVCPVEATYKRKEDGIVVIDHEE
CIHCQLCVDACPYGARRKDESLDNPPEKCNFCIHRVTQGLLPACVETCIGGARTFGDLND
PDSQVSKLVRDNKVYAMLSEAGTSPNIFYIGLPTSTDDQAILNLNYLDWQR

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory