PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 5207768 Shew_0289 acetolactate synthase 2 catalytic subunit (RefSeq) (557 amino acids)

SeqID: 5207768 Shew_0289 acetolactate synthase 2 catalytic subunit (RefSeq)
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599890: acetolactate synthase large subunit[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>5207768 Shew_0289 acetolactate synthase 2 catalytic subunit (RefSeq)
MEQGQKIRGADAVIKALAAHGVTTVFGYPGGAIMPIYDALVGAPVEHLLSRHEQGAAFAA
VGYARASGKTGVCFATSGPGATNLVTVLADALLDSVPLVAITGQVSTAVIGTDAFQEIDV
LGMSLSCTKHSFMVTDVEELVPTLYRAFEIAASGRPGPVLVDIPKDIQIALLDYKAPLQA
IQPEPQVDPSLLESAKNLIAQAQRPMLYVGGGVGMAGAVEQLRDFINQSGMPSVATLKGL
GSIAHDHPGYLGMLGMHGGKAANLAVQECDLLLVVGARFDDRVTGRLASFAEHAKVVHLD
IDIAELGKLRRPDVAIAGDLREILPALAQPLEIAPWLAEVARLKAQHAWSYDRPGELIFA
PKLLNRLAAKLPEDSVVACDVGQHQMWVAQHMWFRRPEDHLSSAGLGTMGFGLPAAIGAK
VARPDACVVAVSGDGSFMMNVQELTTIKRRQIPLKILLIDNQKLGMVKQWQQLFFEERFS
ETDLSDNPDFVTMASAFDIPGRTITQAGEVESALDEMLDAKGPFLLHVRIDEAHNVWPLV
PPGASNRDMMDEMEKQT