PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 5208288 FitnessBrowser__PV4:5208288 (413 amino acids)

SeqID: 5208288 FitnessBrowser__PV4:5208288
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 12230912: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>5208288 FitnessBrowser__PV4:5208288
MQAVDLVVIGGGITGVGIAQCVQAAGYSVVLLEKDNLGEKTSSNSSKLIHGGLRYLESGQ
LGLVRQSLSERKALLTLAPELVKPVPFYIPIYRGSQRGPLAIRAGLSLYALLSELDPLGQ
FQSVPASRWSELAGLKLKGLRAVFRYWDAQTDDGALTRAVAQSARALGAELLTQVSLEQI
EHRPDSCIVSFSHKGETRRLSSRCVINATGPWVNQTLERVTPKVEVSPVELVQGSHLVLD
IPAPSGIFYLESIFDKRVVFVMPWQGKTMIGTTETPIDAVDAAGVTPAEEAYLLGIYRHY
FPLSENDGALEERITGRYCGVRVLPKQGGEAFDLPRDTMMLSRDTHPNLLTVYGGKLTTF
RHTAKEALAWVKNRRGPKPIRADVDKLRLTPVTDEAPSSESPTAKGDFSPQKG