PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 5208388 Shew_0900 acyl-CoA dehydrogenase domain-containing protein (RefSeq) (391 amino acids)

SeqID: 5208388 Shew_0900 acyl-CoA dehydrogenase domain-containing protein (RefSeq)
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 45593149: Crotonobetainyl-CoA dehydrogenase (Crotonobetainyl-CoA reductase)]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>5208388 Shew_0900 acyl-CoA dehydrogenase domain-containing protein (RefSeq)
MARVKFDWQDPLQFDALLSEDERMIRDMVHDYAQEKLMTRVLMANRNEHFDREIMNELGE
LGLLGATLPEAYGCANANYVSYGLVAREIERVDSGYRSAMSVQSSLVMHPIYAYGNEQQR
QKYLPKLATGEWVGCFGLTEPDVGSDPGGMKTRAERIDGGYRLNGAKMWITNSPIADVFV
VWAKLDGVIRGFILEKGMKGLSAPKIEGKFSLRASITGEIVMDNVEVGEEALLPNVEGLK
GPFGCLNKARYGIAWGALGAAEFCWHAARQYSLDRIQFNRPLAATQLIQKKLADMQTEIT
TGLFACLQAGRLMDQDALPVEAISLIKRNSCGKALEIARTSRDMHGGNGISDEFHVIRHV
MNLEAVNTYEGTHDIHALILGRAQTGIQAFG