PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 5208717 Shew_1220 pyruvate carboxylase subunit B (RefSeq) (601 amino acids)

SeqID: 5208717 Shew_1220 pyruvate carboxylase subunit B (RefSeq)
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600628: probable transcarboxylase subunit[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>5208717 Shew_1220 pyruvate carboxylase subunit B (RefSeq)
MSKPLALTDVVLRDAHQSILATRLRIDDMLPIAPLLDKVGFWSLESWGGATFDACIRYLG
EDPWERIRELKKAMPNTPQQMLLRGQNLLGYRHYGDDLVHRFVERAHQNGVDVFRIFDAM
NDVRNLETAVKSVVEVGGHAQGTISYTTSPVHTLDTWVDMAKRLEDMGCHSLCIKDMAGL
LKPFDAFDLISQLKAQTNLIISMQCHATTGLSTATYQKAIEAGIDVLDTAISSMSQTYGH
SATETLVAMVEDTDRATGYDMALLEQIAAYFREVRKKYVAFEGELKGIDSRILRAQVPGG
MLTNMENQLREQGAADKLDLVLEEIPKVREDLGFIPLVTPTSQIVGTQAVINVLTGERYK
SLTKETEGVLKGEYGATPAPVNRELQARVLAGAEAICCRPADLLPAELDSLRAELSEKAA
SEQISLAAELDDDVLTYALFPQIGLKFLKNRDNPDAFEPKPEAPQATTQAATVSEPASAR
QPQGKETYTVNVQGQSFVVEVSPGGDISQIVPSENVVPFAAPEPVAPVVGEGSPMNAPLS
GNIFKVNVQPGDAVKAGDVVIILEAMKMETEIRAESDGVVAKVWVKEGDSVAVGNQLLAI
A

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory