PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 5208932 FitnessBrowser__PV4:5208932 (337 amino acids)

SeqID: 5208932 FitnessBrowser__PV4:5208932
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600647: oxidoreductase Rmd[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>5208932 FitnessBrowser__PV4:5208932
MTILVTGGAGYIGSHTVVELLNDDQQVVIIDNLSNSSVEALKRVEQITNKGVTFYQGDVL
NKAFLQKVFTDHDIDAVIHFAGLKAVGESVAQPLRYYENNVTGTLVLCEVMAEFNVKNLV
FSSSATVYGDPASLPITEDFPTGATNPYGQSKLMVEHILKDLHHSDSSWNIARLRYFNPV
GAHESGLIGEDPNDIPNNLMPFIAQVAVGQREKLSVFGDDYDTHDGTGVRDYIHVVDLAK
GHLKALAKLNTQPGLVTYNLGTGQGYSVLDMVKAFEKACGHAIAYQIAPRRPGDIAACYA
DPHKAQTELNWQATHTIEDMANSSWHWQSSNPSGYKA