PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 5209347 Shew_1821 2-methylcitrate synthase/citrate synthase II (RefSeq) (374 amino acids)

SeqID: 5209347 Shew_1821 2-methylcitrate synthase/citrate synthase II (RefSeq)
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 3123196: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>5209347 Shew_1821 2-methylcitrate synthase/citrate synthase II (RefSeq)
MVDKKLGGAGLRGQSAGETALCTVGKSGSGLTYCGYDVSDLADNATFEEVAYLLFNGELP
NAAQLDAYKSELMSMRDLPQTLKEVLQRIPADAHPMDVMRTGCSFLGNLEPETDFSQQNK
AANRLLAAFPAIMCYWYRFSHDGVEIDCVTDEDSLGGHFLKLLNGKTPSDQHRRVMDVSL
ILYAEHEFNASTFTARVCASTLSDMFSCITGAIGSLRGPLHGGANEAAMEMIQKFSSPED
AKVQMAGMLERKEKIMGFGHAIYRESDPRNVIIKAWSEKLAKEFGDTSLYDISVACEEYM
WDTKKLFCNADFFHASAYHFMGIPTKLFTPIFVCSRLTGWAAHVMEQRANNRIIRPSADY
IGSAPRKVVPISER

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory