PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 5209391 FitnessBrowser__PV4:5209391 (376 amino acids)

SeqID: 5209391 FitnessBrowser__PV4:5209391
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15596359: succinyl-diaminopimelate desuccinylase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>5209391 FitnessBrowser__PV4:5209391
MSQDVLTLAQDLIARASVTPLDEGCQPLMAKRLAAKGFNIEPMVFEDTTNMWARRGDQGP
LFCFAGHTDVVPVGDLNRWHTPPFEPVVIDGYLHGRGAADMKGSLAAMVVATERFVDKHP
DHKGSIAFLITSDEEGPFINGTTRVIDTLEARNEKITWSLVGEPSSTHKLGDIVKNGRRG
SLTGNLTVKGVQGHVAYPHLADNPIHKAAPALDELARMKWDNGNEFFPPTSFQIANINGG
TGASNVIPGSLEVMFNFRYSTEVTAEILIQRVLNILDAHGLDYDISWIFNGLPFLTDAGP
LLDATREAIYEITGTETDPQTSGGTSDGRFIAPTGAQVIELGPVNATIHKVNECVKVEDI
EQLAKVYERILEKLLC