PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 5209394 Shew_1865 phosphoenolpyruvate-protein phosphotransferase (RefSeq) (568 amino acids)

SeqID: 5209394 Shew_1865 phosphoenolpyruvate-protein phosphotransferase (RefSeq)
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 131475: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>5209394 Shew_1865 phosphoenolpyruvate-protein phosphotransferase (RefSeq)
MTMRGIAVSAGIAFGQAKVLRTYESKLDYHLLPPSQLAREQQRLNRALKTLIKQSQACAA
KLDPESDNYQLIEADLLLLEDEELLAELSDTIGKRQFSAALAVEHSFAKQAQAMQEADSP
YLARRAEDVLSLGQRLIRTLLTGHCDNLSRLPENAIVLAKDITPAEFATLPLERVSALVL
QTGGVTSHTAILARSAGIPTLMSCPWQTLEVTDGMVLAVDAINGELYLEPDETQIDDLNA
QKQQADERKSALLALKGTVTQTKDGRSIPLLANVGCISEINHLADVGAEGVGLFRTEFLF
MNNHELPDENRQYQLYCDALQLLDGKPLTIRSMDLGADKEVPTLAMDSEENPALGLRGVR
YTLAHPKLFSAQLKAILRAANHGPIRLMFPMVNQVEELEAVLALLELCKQELVEAEKGFG
ELELGIVVETPAAVFNLASMLPLLDFVSIGTNDLTQYTMAADRANPLLIDQYPVLSPVII
RLIAQIIEQAKAAKVRVSMCGELASNPSATALLIGLGLEEFSVNLASLLEVKQALSRWSY
PDCVELAHKALQISRIDALNQLLTHCHS

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory