PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 5209419 FitnessBrowser__PV4:5209419 (421 amino acids)

SeqID: 5209419 FitnessBrowser__PV4:5209419
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [12 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 120593: L-fucose-proton symporter]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>5209419 FitnessBrowser__PV4:5209419
MAMMQQSSTATGVGGEQENYRFALVSLTSLFFMWGFITCLNDILIPHLKAAFSLNYAEAM
LIQFCFFGAYFLVSMPAGKLVKALGYQKGIVTGLLIAALGCALFYPAAALATYGLFLGAL
FVLASGITILQVAANPYVNALGSVETASSRLNLTQAFNALGTTVAPYFGAVLILSVAVEA
SETLTQAQAEAEVVKLPYLILATALGVLALVFAKLDLPQIKEHCQSGEQGEVVHNGKTSA
LQSLHLVLGAVGIFVYVGAEVSIGSFLVNFLAQDDIAGLSEASAASYITYYWGGAMVGRF
IGSAVMQKVPAGTVLGFNALMAALLVALAMTSTGTVAMWAILAVGLFNSIMFPTIFSLAL
RDLGPHTSQGSGVLCLAIVGGAILPLLQGVLADNIGIQHAFFLPIICYLFIMFYGVKGSK
L