PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 5209456 Shew_1927 dihydrolipoamide acetyltransferase (RefSeq) (520 amino acids)

SeqID: 5209456 Shew_1927 dihydrolipoamide acetyltransferase (RefSeq)
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 129056: Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex (E2) (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex)]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>5209456 Shew_1927 dihydrolipoamide acetyltransferase (RefSeq)
MIKDFILPDIGEGVVECELVEWLVAEGDIVTEDQPIADVMTDKALVQIPAVHGGVIKKLH
YKKGDIAIVHEPLYSVEIDGELDGDATTESAAEEAVVQSDSQPVVGGKRVEEFLLPDIGE
GIVECELVEWLVAEGDMVVEDQPIADVMTDKALVQIPAIKSGKVVKLHYRKGQLAQVHTP
LFSIEVESEEGIVAAPVADTAPAAVDHEEVELHAPAGNGKALASPAVRRLARSYDIDLSL
VPGSGKHGRVYKEDVERFRSGEAVKAKAAKAQAQSEPTAAPIAVSAGDRVEPIRGVKAVM
AKMMTESVSTIPHFTYCEELDLTELVALRESMKARYSSDDLKLTMMPFFMKAMSLALTQF
PGINSRVNDDCTEQTFLASHNIGMAVDSKVGLLVPNVKDVQQKSILEVAAEITRLTKDAR
SGRVSPADLKGGSISISNIGALGGTVATPIINKPEVAIVALGKLQTLPRFNDKGEVEARK
IMQISWSGDHRVIDGGTIARFCNLWKQYLESPQEMLLAMH

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory