PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 5209750 FitnessBrowser__PV4:5209750 (257 amino acids)

SeqID: 5209750 FitnessBrowser__PV4:5209750
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 48474306: Imidazole glycerol phosphate synthase subunit hisF]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>5209750 FitnessBrowser__PV4:5209750
MLAKRIVPCLDVRDGKVVKGVQFRNHEIVGDIVPLAARYAAESADELVFYDITASAHDRV
VDKSWVSRVAEQIDIPFCVAGGIKSIEQAREKLAFGADKISINSPALSDPGLIDRLQDEF
GRQCIVIGIDSYYDADTDSYKVKQFTGDEAATKDTQWYTQDWVEEVQRRGCGEIVLNVMN
QDGVRQGYDIKQLAMVRAICDVPLIASGGAGTMEHFLEVFTQAGVDAALAASVFHKGIIE
IEALKRYLLDNGVQMRL

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory