PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 5209800 FitnessBrowser__PV4:5209800 (349 amino acids)

SeqID: 5209800 FitnessBrowser__PV4:5209800
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595847: anthranilate phosphoribosyltransferase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>5209800 FitnessBrowser__PV4:5209800
MSELQPIFDRLYQGQTISREETKALFSEIVEGKMDPVAMAGMLVAMKMRGETIDEISGAA
DALLQAAKAFPAPSEATRTQGIVDIVGTGGDGHNTINISTTSAFVAAAAGAKVAKHGNRS
VSSKSGSSDLLAQFGIDLTMAPETARDCLDDLGLCFLFAPHYHGGVRHAVPVRQALKTRT
LFNVLGPLINPARPDYMLLGVYDPMLVRPICDVLKALDVKRAMVVHGSGLDEVAVHGETL
VCELKQGEIVEYYLSPEALGLSRAAISDLAGAGPAENAEITRAILQGHGELAHTEAVAAN
AGCALYVSGCCDSPQQGTALALQTLASGKAYILLQQLASASQSDNLGTN