PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 5209835 FitnessBrowser__PV4:5209835 (363 amino acids)

SeqID: 5209835 FitnessBrowser__PV4:5209835
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>5209835 FitnessBrowser__PV4:5209835
MFQKTQAKSQFSTDEHPHRRFNPLTGEWVLLSPHRSKRPWQGQTEALDLTTAPSYDSECF
LCPGNKRINGEQNPKYDTTFVFQNDFAALNSDGPKAQGEDPLFRFETVEGESRVLCFSPD
HSLTLAQLDPEAMQAVIAAWQSQSELLGKKYLWVQVFENKGAAMGCSNPHPHGQIWAHNH
LPTLVATKQQRLADYYQQHHSNLLGDYVERELQQEVRIVVSNHDWVALVPYWASWPFETL
VLPRFDIRRMTELTAETRESLGEIIGALTVRYDNLFQCAFPYSMGWHGAPFDGQDHPEWC
LHAHFYPPLLRSASVKKFMVGYELLAEIQRDITPEQAAARLREQSPIHYKSSHYKNSHNK
QSQ