PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 5210117 FitnessBrowser__PV4:5210117 (513 amino acids)

SeqID: 5210117 FitnessBrowser__PV4:5210117
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>5210117 FitnessBrowser__PV4:5210117
MQNHSDLLDIGVIGLGVMGKNLALNIADNRYRVAAFDLDSTKRDALLEQEQKERPALQAQ
RILGCSNLSEMLSSLAKPRVLVLSVPAGAPVDGVCNALLEAGIEQDDIVVDTGNSLWTDT
VAREAQYQDKFIFFSCAISGGEMGARFGPSLMPSGDIKAWDRIKPIWEAIAAKVDPKTGL
PIERQEPGNPVTEGEPCTTYIGPAGAGHYVKMVHNGIEYADMQLICEAYQLLSDGLGLSA
AEVGKIFARWNQGSLNSYLMEISADVLSQADPLTGKPLVEMILDKAGQKGTGLWTAVSSL
QIGCPAPTIAEAVYARAVSTQKHQRQQLSLLLAGPEALTLSDDERAAFIDELENALYCAK
IACYAQGFQLMAMNAQERGWRLDFAEIAKIWRAGCIIRATFLQSITQAYQQAQRAGESLD
NLLMAETFSLALSAKQQDWRRAVARAIMSGVPVPCIGSALAYYDSYRSETLPANLLQGQR
DFFGAHTFERIDMPAGEKYHLNWSHSERTLEKL