PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 5210131 FitnessBrowser__PV4:5210131 (233 amino acids)

SeqID: 5210131 FitnessBrowser__PV4:5210131
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597195: DhcA, dehydrocarnitine CoA transferase, subunit A[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>5210131 FitnessBrowser__PV4:5210131
MAGLNKLVTSYEEALEGLTDNMTVMVGGFGLCGIPEGLIAQMVKSGAKGLTAISNNAGVD
DFGLGLLLKSRQISTMIASYVGENATFEQQMLSGELNVILTPQGTLAEKIRAGGAGIPAF
FTATGYGTPVAEGKETREIDGRHYVLEPALTADFALVRAWKADTMGNLVFRKTAANFNPM
MATAGKITVVEAEHIVEPGELDPDHIHTPGIYVDRLIQGTFEKRIEQRTVKSK