PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 5210425 FitnessBrowser__PV4:5210425 (569 amino acids)

SeqID: 5210425 FitnessBrowser__PV4:5210425
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 544139: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>5210425 FitnessBrowser__PV4:5210425
MNEQTYLQQVKALQAARWPKGTTREPIYPHGEKPVTEYLSAWARLNPTKVAIQFYGYELT
YAQLDEMSTRFANVLRGLGVGQGDGVAVFMPNCPQFHIAFLGILKCGAVHMPVSPLSKEM
ELRHQLGDSQPKVALCYDALLPTMRPVCQELGIEHIITTSYTDVRPRAITAVLPDLFEIP
KTPLADGIIDFFEAIDNASKEVLDYIPALDDLAAINYTSGTTGMPKGVMHTHRNMIGTMA
SYYPVTFGEVGPEGTDLVMLSFLPEFWIAGEDTGLLLPLYSGATLVLMARWDTKAFMELV
HHHKVNMTIMLIDSVDEILNHPHLHQFDLTSLTTVPCISFIKKLNRDYRQRWRELTGTTL
FEVAYGMTETHTCDTFTRGFQVDDMDLSFDPAFLGLPVPGTEIKICDFVTGELMPLGVEG
EIQIRTPTLLKGYWNKPDLNKNLFEEGGWYRTGDLGMITEEGFFRYLGRRKEMLKVNGMS
VFPTEVESMLGQHPAIASCGVVGRPDERKGQVPVAFVTLKPGFDETQESLQAWCVNAMAI
FKVPEIRIQERLPMTATGKIRKVDLEKSL