PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 5210426 Shew_2867 pyruvate carboxylase, propionyl-CoA carboxylase (RefSeq) (1094 amino acids)

SeqID: 5210426 Shew_2867 pyruvate carboxylase, propionyl-CoA carboxylase (RefSeq)
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15596597: probable pyruvate carboxylase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>5210426 Shew_2867 pyruvate carboxylase, propionyl-CoA carboxylase (RefSeq)
MTRVFNRILIANRGEIAIRIAQTCADMGIDSLAIYAEDDSQSLHTKKADQAVALKGRGVK
AYLDIEQLIAVAKAHGCDAVHPGYGFLSENSSFSKRCHEEGICFIGSSAELLDLLGNKAT
ARETALRSDTPLTGGINKPCSLEEVQAFFTSLGDGAAVMIKALAGGGGRGMRPVSRYEDL
AEAYRQCREEAIIAFGSGELYVEQLVQHARHIEVQILGDGTGAAVHAWERECTLQRRNQK
LLEIAPSPSLDDATRMPIIESALQLASDVKYQGLGTFEFLLDADDHSKFYFMEINPRIQV
EHTITEEITGLNLVKLQILLGAGKTLAELSLTEAPIKRGCAIQARINLEQMLPDGSTKPA
SGVIKAYQVPNGHNVRVDDYLYAGYKVSPSYDSLGAKIIAKGEDFSAALNKVYLSLKALN
IDGVQSNKALLMNLLQREEVQHNRLSTRFVEAHMAELLADDDHHEHFFNIASDQQETVQA
VNIPAGCEGVKSPTAGVLVQVNIESGDEVFAGQEIAVIEAMKMEIPVKSEHAGIVTEVLT
GNIGEVIDEHQILAVIQPGEVSVTGGQTEMEIDLDYIRANLAEFFDRRDKTLDESRSEAV
AKRHSEGKRTARENLNDLLDEGSFNEYGQLAIAAQRQKHAIDKLVEISPADGKITGIGTV
NADSFGEEAARCAVMSYDYTVMAGSQGLVNHKKTDRLLELCKKWKLPLVIFAEGAGGRPS
DTDYPGVAFLNLHTFSSLGELSGLVPTVGIAAGNCFAGNAALYGVCDLTIATRQASIGMA
GPAMIEGGGLGVFKPEEVGPPSVLSPNGVIDILVEDEAEAVAVTKKYLSYFQGDLSEWQV
ADQRRLRHLIPENRMAIYDIREVIDTLCDKDSVLELRREFAKNMITAMVRIEGKAYGLYA
NDPRFLGGAIDADAGDKLARFIQLCDAHDIPMISLCDTPGFMVGPESEKRATVRHISRLF
VHGANSTVPLFALVLRKGYGLGVMGMTGGGFTAPVFTASWPSGEFGAMGIEGAVRIAAKR
QLEAIADPDEREATFKAMVDKLYSHGSAINTASYLELDAVIDPMESRDWIVRGLACLPKP
EKRSGKKRNCIDTW