PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 5210843 FitnessBrowser__PV4:5210843 (1076 amino acids)

SeqID: 5210843 FitnessBrowser__PV4:5210843
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    2.50
    OuterMembrane          2.50
    Periplasmic            2.50
    Extracellular          2.50
    Cytoplasmic            0.00
  Final Prediction:
    Unknown

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>5210843 FitnessBrowser__PV4:5210843
MINRFSLLQRLSYTLAFSLVFGLVVSNPALARDRWQDHTLFEVNKLAPHASFFGYESEPL
ALLDEMDRSQLYLDLNGRWRFHLAKNPDATPKEFAAPEFDASHWGSIQVPGNFETQGYGH
AIYLDERYPFDTKWPDAPSDHNPTGLYRKTFTLPAHWQQKQVFIHIGAARSALTLFVNGR
EVGYSQGAKTPAEFDITPYLQAGDNLVAMQLIRWSDASYLESQDMLRMTGIEREVYLYAT
PKQRIEDIQVVTHLNEDLTRAKLAIRVDIASHQPGVRALELEARLLDPQGKPVAKANQRL
SLKGDAKPVFSQTLISPKLWNAEMPNLYRLILTLKTEKGETLQVASQQIGVRKIAIENGQ
LKVNNKAITIRGVDRHETDPQTGHVVSRETMELDIRLMKQNNINAVRSSHYPNHPYWLSL
ADRYGLYVIDEANIESHPLAIDDKTQLGNEMSWLPAHQARIERMVERDKNHPSVIIWSLG
NEAGEGKLFERLYQWIKRRDPNRPVQYEPAGEAPYTDIVAPMYPSIERIREYAERASDRP
LIMIEYAHAMGNSVGNLQDYWDVIEAYPQLQGGFIWDWVDQALAFSNDLGQRYWAYGKDY
HPDMPTDGNFLNNGLVDPDRNPHPHLSEVKKVYQPIKLRDFKVEGDKASVNLINGFDFAS
TSGLSLNWTLQKDGKIIASKRQAMPILSPGEQARVSLTLPGKQSLSAPFEYHLLLEVLVD
TPRPLLPSDLRIAFEQFALPRFGTKAAYQVKKNQAKISEDSGSYRLTSGELSYEFDKRSG
WLTQIYQEGEPQLKAPLMANFWRAPTDNDLGNQMPDWAGAWQDAATELEVTAIDADLALG
LTISQTHAEKGFSLRTRYSLDNAGRLMVDSQFIPGNKPLADLPRFGFSTRLGFEHRYLSY
FGRGPEETYADRQSGNPLGWYALPIEQTYHRYPRPQETGQRTQVRYAAVTDQRGQGWLAI
ANQAHAGEQDRKEADEVATLQTSLWPFAQADIDFRRGDAQDSASGLVAVTRNHGAEIPLR
EFVTWNIDYRQMGVGGDTSWGRPVHGPYRIKAEPIRFGFTLMPVSSDDDIRTLARQ