PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 5210845 FitnessBrowser__PV4:5210845 (388 amino acids)

SeqID: 5210845 FitnessBrowser__PV4:5210845
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>5210845 FitnessBrowser__PV4:5210845
MSNTAQRANKLFVQTFGTTADDLYQAPGRVNLIGEHTDYNDGFVLPAAINFRTVIAVKQR
DDDKFRAVSDAFPGKIYTWHFGQEGEMDPNDSWINYLKGFTAAVSASGLPAKGMDLAVVG
SVPLGAGLSSSAALEIAFGTALNDCSQLRLSPLAVAQMAQRGENQYVGCACGIMDQMISA
MAQEEHALLIDCEDLDCEPVPIPESLSLIIVNSNVPRGLVDSEYNLRREQCEQVAEHFGI
ESLRHLELRTLEGAKDELPEVCYRRARHVLSENRRTQNAAHALEAGNIAKLSELMAQSHQ
SMRDDFEITVPEIDKLVEIIDAVVGDRGGVRMTGGGFGGCVVALVDHDLTDAVVEAVERQ
YQAATGLEASVYLCSASQGASRLDEELY

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory