PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 5211004 FitnessBrowser__PV4:5211004 (650 amino acids)

SeqID: 5211004 FitnessBrowser__PV4:5211004
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 129056: Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex (E2) (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex)]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>5211004 FitnessBrowser__PV4:5211004
MAELKEVLVPDIGGDEVQVIEICAAVGDTLAAEESIITVESDKATMDIPAPFAGKLAEIK
VAVGDTVSEGTLIAMMEAGEAQAAEPAPAESAPVAAPAAPAPAAPVASAPASAQVIEVTV
PDIGDASDVDVIEVLVAVGDSINVDTGLITLETDKATMEVPAPAAGVVKEMKVAVGDKVS
QGSLVLMLEVSGGEAAAPAASAAPAPSAEAAPAAAASIEVKEISVPDIGDASDVDVIEVL
VAAGDVIEADQGLITLETDKATMEVPAPFAGKLVSVTVKVGDKVSQGSVIATIETQSSAP
VAAPAPAAAAPAPVAQASAPAPAASKPPVPHHPSAGSKPVTGAVHASPAVRRLAREFGAD
LTQVTGTGPKGRILKEDVQAFIKYELSRPKASAATSVGAGEGGLQVIAAPKVDFAKFGEV
EEVPLSRIQKISGPNLHRNWVTIPHVTQFDEADITEMEAFRKQQNEIAAKQKTGVKITPL
VFMMKAVAKTLQQFPVFNASLSADGESLIKKKYYHIGVAVDTPNGLVVPVVRDVDKKGII
ELSAELMEISVKARDGKLKAADMQGSCFTISSLGGIGGTAFTPIVNYPDVAILGVSKSEI
KPKWNGKEFEPKLMLPLSLSYDHRVIDGAMAARFSVTLSSMLSDIRTLIL

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory