PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 5211288 FitnessBrowser__PV4:5211288 (356 amino acids)

SeqID: 5211288 FitnessBrowser__PV4:5211288
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600647: oxidoreductase Rmd[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>5211288 FitnessBrowser__PV4:5211288
MNSEQHHPLAGRNILITGGAGFIGSALIRHLIALGGCRVVNYDKLTYAGNLASLESIAQA
PNYHFIQADINDGDTLGGALRQYQIDLVIHLAAETHVDRSIEGPRAFIGTNIVGTFELLQ
QCLDYYRKLPIEIAARFRLHHVSTDEVFGDLGSDEAGYFSEQSPYAPSSPYSASKAAADH
LVRAWHRTYGLPVVLSNCSNNYGPYQYPEKLIPVTLLNALQGKLIPVYGDGKQIRDWLYV
DDHAHALCQVAARGELGESYNIGGMNEMTNLEVVSLICDLLNQKVTEKPCGISDFRQLIG
FVKDRPGHDTRYAIDASKLSRTLGWQPSESFASGLEKTVDWYLTHLDWCHQVAGQS