PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 5211405 Shew_3814 naphthoate synthase (RefSeq) (300 amino acids)

SeqID: 5211405 Shew_3814 naphthoate synthase (RefSeq)
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598787: probable enoyl-CoA hydratase/isomerase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>5211405 Shew_3814 naphthoate synthase (RefSeq)
MTDKVSDIFDPSLWDRVSGFDFEDITYHRAKDQGTVRIAIDRPDCLNSFRPKTVDELYIA
LDHARQWSDVGCVLLTGNGPSAKGQWSFSAGGDQRIRGKDGYKYEGEETDKPDLARMGRL
HILEVQRLIRFMPKVVIAVVPGWAVGGGHSLHVVCDLTLASKEHAVFKQTDPDVGSFDSG
YGSAYLAKMIGQKRAREIFFLGFNYSADEAFDMGMVNRAIPHAELETEALRWAKEINSKS
PTAMRMLKYGFNLPDDGLVGQQLFAGEATRLAYGTDEAVEGRDAFLEKRDQDFSKFPWHY