PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 642682810 IMG__ChlphaBS1_FD:642682810 (320 amino acids)

SeqID: 642682810 IMG__ChlphaBS1_FD:642682810
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    2.00
    Cytoplasmic            2.00
    Extracellular          2.00
    Periplasmic            2.00
    OuterMembrane          2.00
  Final Prediction:
    Unknown

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>642682810 IMG__ChlphaBS1_FD:642682810
MKTVTGFASATIGNVACGFDVLGFAITEPGDEVILTLREERSGELPVSITSITGDGGALP
RNPKKNTSSFVVLKFLEYIRTNKGIDFEGHIELELKKNLPLSSGMGSSAASAAAALVAAN
ELMGRPCNKMELVNFAIEGERVACGSAHADNAAPAMLGNFVLIRSYNPIDLITIPSPDNL
YCTLVHPHIEVRTAYARSVLPRMISLKTATEQWGNVGALISGLLTSDYELIGRSLVDVIA
EPKRAPLIPGFYDVKHAALEAGAIGCSIAGSGPSIFAFSSSPETASRVGEAMQTAFSTLK
EKLQSDIWISPVCKQGAKVI

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory